Welcome to FlowSig’s documentation!

FlowSig A python package to infer communication-driven intercellular flows from single-cell and spatial transcriptomics.

Installation

The easiest way to currently install FlowSig is to create a virtual environment and then install within it.

# Create the virtual environment
python3 -m venv flowsigenv

# Activate the virtual environment
source flowsigenv/bin/activate

N.B. make sure you’re using at least Python 3.11!

  1. First approach: pip install

pip install flowsig

  1. Backup approoach: install directly from GitHub repository.

# Clone the repository
git clone https://github.com/axelalmet/flowsig.git
cd ./flowsig/

# Install
pip3 install .

Tutorials

API Reference

Links